BUILD COMPLETE -  build.16
Date of build: 2012-05-12T00:26:39
Time to build: 1 minute(s) 28 second(s)
Last changed: 2012-05-11T23:14:22
Last log entry: moving RCSBLOcalDOmainProvider to ava project
Build Artifacts

 Modifications since last successful build:  (7)
deleted andreas /JFatCatServer/branches/version2.0/src/main/java/org/rcsb/fatcat/server/dao/RCSBLocalPDPProvider.java 15480 2012-05-11T23:14:22 moving RCSBLOcalDOmainProvider to ava project
modified andreas /JFatCatServer/branches/version2.0/src/main/java/org/rcsb/fatcat/server/StartupServlet.java 15480 2012-05-11T23:14:22 moving RCSBLOcalDOmainProvider to ava project
deleted andreas /JFatCatServer/branches/version2.0/src/main/java/org/rcsb/fatcat/server/dao/RCSBLocalDomainProvider.java 15480 2012-05-11T23:14:22 moving RCSBLOcalDOmainProvider to ava project
modified andreas /JFatCatServer/branches/version2.0/pom.xml 15478 2012-05-11T17:56:06 latest versions
modified andreas /JFatCatServer/branches/version2.0/src/main/java/org/rcsb/fatcat/server/DomainServiceServlet.java 15415 2012-05-07T21:42:50 now can work off local database
added andreas /JFatCatServer/branches/version2.0/src/main/java/org/rcsb/fatcat/server/dao/RCSBLocalPDPProvider.java 15414 2012-05-07T21:42:17 new providers for local data access
added andreas /JFatCatServer/branches/version2.0/src/main/java/org/rcsb/fatcat/server/dao/RCSBLocalDomainProvider.java 15414 2012-05-07T21:42:17 new providers for local data access

Initial Messages
[INFO] Scanning for projects...
[INFO] Searching repository for plugin with prefix: 'source'.
[INFO] ------------------------------------------------------------------------
[INFO] Building server Maven Webapp
[INFO] task-segment: [clean, install, source:jar, javadoc:jar, deploy]
[INFO] ------------------------------------------------------------------------
clean:clean {execution: default-clean}
[INFO] Deleting directory /opt/cruise/projects/jfatcatserver/target
resources:resources {execution: default-resources}
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
compiler:compile {execution: default-compile}
[INFO] Compiling 39 source files to /opt/cruise/projects/jfatcatserver/target/classes
resources:testResources {execution: default-testResources}
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /opt/cruise/projects/jfatcatserver/src/test/resources
compiler:testCompile {execution: default-testCompile}
[INFO] Compiling 2 source files to /opt/cruise/projects/jfatcatserver/target/test-classes
surefire:test {execution: default-test}
[INFO] Surefire report directory: /opt/cruise/projects/jfatcatserver/target/surefire-reports
-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running TestTarFileSSH
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 sec
Running TestResponses
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec
Results :
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
antrun:run {execution: default}
[INFO] Executing tasks
 [copy] Copying 1 file to /opt/cruise/projects/jfatcatserver/target/classes
[INFO] Executed tasks
war:war {execution: default-war}
[INFO] Packaging webapp
[INFO] Assembling webapp [jfatcatserver] in [/opt/cruise/projects/jfatcatserver/target/jfatcatserver]
[INFO] Processing war project
[INFO] Copying webapp resources [/opt/cruise/projects/jfatcatserver/src/main/webapp]
[INFO] Webapp assembled in [653 msecs]
[INFO] Building war: /opt/cruise/projects/jfatcatserver/target/jfatcatserver.war
[INFO] WEB-INF/web.xml already added, skipping
install:install {execution: default-install}
[INFO] Installing /opt/cruise/projects/jfatcatserver/target/jfatcatserver.war to /home/andreas/.m2/repository/org/rcsb/fatcat/jfatcatserver/2010.3-SNAPSHOT/jfatcatserver-2010.3-SNAPSHOT.war
[INFO] Preparing source:jar
[INFO] No goals needed for project - skipping
source:jar {execution: default-cli}
[INFO] Building jar: /opt/cruise/projects/jfatcatserver/target/jfatcatserver-sources.jar
javadoc:jar {execution: default-cli}
Loading source file /opt/cruise/projects/jfatcatserver/src/main/java/testJsch.java...
Loading source files for package org.rcsb.ava.servlet...
Loading source files for package org.rcsb.ava.dbsearch...
Loading source files for package org.rcsb.fatcat.server...
Loading source files for package org.rcsb.fatcat.server.dao...
Loading source files for package org.rcsb.fatcat.server.threads...
Loading source files for package org.rcsb.fatcat.server.scripts...
Loading source files for package org.rcsb.fatcat.server.symmetry...
Loading source files for package org.rcsb.fatcat.server.util...
Loading source files for package demo...
Constructing Javadoc information...
Standard Doclet version 1.7.0
Building tree for all the packages and classes...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/testJsch.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/testJsch.MyProgressMonitor.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/testJsch.MyUserInfo.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/servlet/SCOPCache.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/servlet/TestServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/ConcurrentStructureAlignment.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/DatabaseSearchJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/DbSearchManager.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/DbSearchstatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/StrucAlignDatabaseSearch.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/AlignmentPairDispatcher.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/AlignmentPairLoader.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/DomainServiceServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/StartupServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/StaticFileServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/StructureAlignmentCalculator.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/TimedServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/dao/SymmetryFormBean.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/CheckAllResultsThereRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/CheckFileNamePoisoningThread.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/CheckPIDData.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/CleanupRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/PrintResultSizeThread.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/RandomValidationRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/RemoveDuplicates.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/scripts/InitDomainSplitDB.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/scripts/TestStandAloneDBConnection.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/scripts/WeeklyUpdatePairs.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/CensusResultFilter.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/SymmetryCalcJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/SymmetryCalcJob.JobStatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/SymmetryExecutorManager.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/util/AlignmentJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/CheckComplementary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/CheckFileNamePoisoning.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/CountDomainsPerPDB.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/DemoFarmJobRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/DisplayDBStatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/DoForAllTables.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/OptimizeTables.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/TestDbSearch.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/overview-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/servlet/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/servlet/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/servlet/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/package-tree.html...
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Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/scripts/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/scripts/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/util/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/util/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/util/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/constant-values.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/serialized-form.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/class-use/testJsch.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/class-use/testJsch.MyUserInfo.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/class-use/testJsch.MyProgressMonitor.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/servlet/class-use/TestServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/servlet/class-use/SCOPCache.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/class-use/DbSearchstatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/class-use/DbSearchManager.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/class-use/DatabaseSearchJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/class-use/StrucAlignDatabaseSearch.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/class-use/ConcurrentStructureAlignment.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/class-use/TimedServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/class-use/DomainServiceServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/class-use/StaticFileServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/class-use/AlignmentPairLoader.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/class-use/StartupServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/class-use/AlignmentPairDispatcher.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/class-use/StructureAlignmentCalculator.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/dao/class-use/SymmetryFormBean.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/class-use/PrintResultSizeThread.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/class-use/CheckPIDData.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/class-use/CheckAllResultsThereRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/class-use/RemoveDuplicates.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/class-use/RandomValidationRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/class-use/CleanupRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/class-use/CheckFileNamePoisoningThread.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/scripts/class-use/InitDomainSplitDB.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/scripts/class-use/WeeklyUpdatePairs.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/scripts/class-use/TestStandAloneDBConnection.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/class-use/SymmetryExecutorManager.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/class-use/CensusResultFilter.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/class-use/SymmetryCalcJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/class-use/SymmetryCalcJob.JobStatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/util/class-use/AlignmentJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/class-use/CheckFileNamePoisoning.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/class-use/CheckComplementary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/class-use/DoForAllTables.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/class-use/OptimizeTables.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/class-use/DisplayDBStatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/class-use/DemoFarmJobRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/class-use/CountDomainsPerPDB.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/class-use/TestDbSearch.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/demo/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/dbsearch/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/ava/servlet/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/dao/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/scripts/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/symmetry/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/threads/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/org/rcsb/fatcat/server/util/package-use.html...
Building index for all the packages and classes...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/overview-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/index-all.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/allclasses-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/allclasses-noframe.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/index.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/overview-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/apidocs/help-doc.html...
13 warnings
[WARNING] Javadoc Warnings
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:373: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:352: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:389: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:373: warning - @param argument "conn" is not a parameter name.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:373: warning - @return tag cannot be used in method with void return type.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:389: warning - @param argument "conn" is not a parameter name.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:389: warning - @return tag cannot be used in method with void return type.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:373: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:248: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:313: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:373: warning - @param argument "method" is not a parameter name.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:373: warning - @param argument "name1" is not a parameter name.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:373: warning - @param argument "name2" is not a parameter name.
[INFO] Building jar: /opt/cruise/projects/jfatcatserver/target/jfatcatserver-javadoc.jar
resources:resources {execution: default-resources}
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
compiler:compile {execution: default-compile}
[INFO] Compiling 1 source file to /opt/cruise/projects/jfatcatserver/target/classes
resources:testResources {execution: default-testResources}
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /opt/cruise/projects/jfatcatserver/src/test/resources
compiler:testCompile {execution: default-testCompile}
[INFO] Nothing to compile - all classes are up to date
surefire:test {execution: default-test}
[INFO] Surefire report directory: /opt/cruise/projects/jfatcatserver/target/surefire-reports
-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running TestTarFileSSH
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 sec
Running TestResponses
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec
Results :
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
antrun:run {execution: default}
[INFO] Executing tasks
 [delete] Deleting: /opt/cruise/projects/jfatcatserver/target/classes/jfatcatserver.properties
 [copy] Copying 1 file to /opt/cruise/projects/jfatcatserver/target/classes
[INFO] Executed tasks
war:war {execution: default-war}
[INFO] Packaging webapp
[INFO] Assembling webapp [jfatcatserver] in [/opt/cruise/projects/jfatcatserver/target/jfatcatserver]
[INFO] Processing war project
[INFO] Copying webapp resources [/opt/cruise/projects/jfatcatserver/src/main/webapp]
[INFO] Webapp assembled in [1997 msecs]
[INFO] Building war: /opt/cruise/projects/jfatcatserver/target/jfatcatserver.war
[INFO] WEB-INF/web.xml already added, skipping
install:install {execution: default-install}
[INFO] Installing /opt/cruise/projects/jfatcatserver/target/jfatcatserver.war to /home/andreas/.m2/repository/org/rcsb/fatcat/jfatcatserver/2010.3-SNAPSHOT/jfatcatserver-2010.3-SNAPSHOT.war
[INFO] Installing /opt/cruise/projects/jfatcatserver/target/jfatcatserver-sources.jar to /home/andreas/.m2/repository/org/rcsb/fatcat/jfatcatserver/2010.3-SNAPSHOT/jfatcatserver-2010.3-SNAPSHOT-sources.jar
[INFO] Installing /opt/cruise/projects/jfatcatserver/target/jfatcatserver-javadoc.jar to /home/andreas/.m2/repository/org/rcsb/fatcat/jfatcatserver/2010.3-SNAPSHOT/jfatcatserver-2010.3-SNAPSHOT-javadoc.jar
deploy:deploy {execution: default-deploy}
[INFO] Retrieving previous build number from rcsb-pdb-maven-repo
Uploading: scp://emmy.rcsb.org/opt/maven//org/rcsb/fatcat/jfatcatserver/2010.3-SNAPSHOT/jfatcatserver-2010.3-SNAPSHOT.war
43559K uploaded (jfatcatserver-2010.3-SNAPSHOT.war)
[INFO] Retrieving previous metadata from rcsb-pdb-maven-repo
[INFO] Uploading repository metadata for: 'snapshot org.rcsb.fatcat:jfatcatserver:2010.3-SNAPSHOT'
[INFO] Uploading project information for jfatcatserver 2010.3-SNAPSHOT
[INFO] Retrieving previous metadata from rcsb-pdb-maven-repo
[INFO] Uploading repository metadata for: 'artifact org.rcsb.fatcat:jfatcatserver'
[INFO] Retrieving previous build number from rcsb-pdb-maven-repo
Uploading: scp://emmy.rcsb.org/opt/maven//org/rcsb/fatcat/jfatcatserver/2010.3-SNAPSHOT/jfatcatserver-2010.3-SNAPSHOT-sources.jar
65K uploaded (jfatcatserver-2010.3-SNAPSHOT-sources.jar)
[INFO] Retrieving previous build number from rcsb-pdb-maven-repo
Uploading: scp://emmy.rcsb.org/opt/maven//org/rcsb/fatcat/jfatcatserver/2010.3-SNAPSHOT/jfatcatserver-2010.3-SNAPSHOT-javadoc.jar
251K uploaded (jfatcatserver-2010.3-SNAPSHOT-javadoc.jar)
[INFO] ------------------------------------------------------------------------
[INFO] Building server Maven Webapp
[INFO] task-segment: [javadoc:aggregate] (aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] Preparing javadoc:aggregate
[INFO] ------------------------------------------------------------------------
[INFO] Building server Maven Webapp
[INFO] ------------------------------------------------------------------------
[INFO] No goals needed for project - skipping
javadoc:aggregate {execution: default-cli}
Loading source file /opt/cruise/projects/jfatcatserver/src/main/java/testJsch.java...
Loading source files for package org.rcsb.ava.servlet...
Loading source files for package org.rcsb.ava.dbsearch...
Loading source files for package org.rcsb.fatcat.server...
Loading source files for package org.rcsb.fatcat.server.dao...
Loading source files for package org.rcsb.fatcat.server.threads...
Loading source files for package org.rcsb.fatcat.server.scripts...
Loading source files for package org.rcsb.fatcat.server.symmetry...
Loading source files for package org.rcsb.fatcat.server.util...
Loading source files for package demo...
Constructing Javadoc information...
Standard Doclet version 1.7.0
Building tree for all the packages and classes...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/testJsch.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/testJsch.MyProgressMonitor.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/testJsch.MyUserInfo.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/servlet/SCOPCache.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/servlet/TestServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/ConcurrentStructureAlignment.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/DatabaseSearchJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/DbSearchManager.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/DbSearchstatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/StrucAlignDatabaseSearch.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/AlignmentPairDispatcher.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/AlignmentPairLoader.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/DomainServiceServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/StartupServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/StaticFileServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/StructureAlignmentCalculator.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/TimedServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/dao/SymmetryFormBean.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/CheckAllResultsThereRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/CheckFileNamePoisoningThread.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/CheckPIDData.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/CleanupRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/PrintResultSizeThread.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/RandomValidationRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/RemoveDuplicates.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/InitDomainSplitDB.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/TestStandAloneDBConnection.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/WeeklyUpdatePairs.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/CensusResultFilter.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/SymmetryCalcJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/SymmetryCalcJob.JobStatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/SymmetryExecutorManager.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/util/AlignmentJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/CheckComplementary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/CheckFileNamePoisoning.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/CountDomainsPerPDB.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/DemoFarmJobRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/DisplayDBStatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/DoForAllTables.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/OptimizeTables.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/TestDbSearch.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/overview-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/servlet/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/servlet/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/servlet/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/dao/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/dao/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/dao/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/util/package-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/util/package-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/util/package-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/constant-values.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/serialized-form.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/class-use/testJsch.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/class-use/testJsch.MyUserInfo.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/class-use/testJsch.MyProgressMonitor.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/servlet/class-use/TestServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/servlet/class-use/SCOPCache.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/class-use/DbSearchstatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/class-use/DbSearchManager.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/class-use/DatabaseSearchJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/class-use/StrucAlignDatabaseSearch.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/class-use/ConcurrentStructureAlignment.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/class-use/TimedServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/class-use/DomainServiceServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/class-use/StaticFileServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/class-use/AlignmentPairLoader.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/class-use/StartupServlet.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/class-use/AlignmentPairDispatcher.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/class-use/StructureAlignmentCalculator.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/dao/class-use/SymmetryFormBean.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/class-use/PrintResultSizeThread.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/class-use/CheckPIDData.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/class-use/CheckAllResultsThereRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/class-use/RemoveDuplicates.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/class-use/RandomValidationRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/class-use/CleanupRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/class-use/CheckFileNamePoisoningThread.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/class-use/InitDomainSplitDB.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/class-use/WeeklyUpdatePairs.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/class-use/TestStandAloneDBConnection.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/class-use/SymmetryExecutorManager.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/class-use/CensusResultFilter.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/class-use/SymmetryCalcJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/class-use/SymmetryCalcJob.JobStatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/util/class-use/AlignmentJob.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/class-use/CheckFileNamePoisoning.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/class-use/CheckComplementary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/class-use/DoForAllTables.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/class-use/OptimizeTables.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/class-use/DisplayDBStatus.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/class-use/DemoFarmJobRunnable.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/class-use/CountDomainsPerPDB.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/class-use/TestDbSearch.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/demo/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/dbsearch/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/ava/servlet/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/dao/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/scripts/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/symmetry/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/threads/package-use.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/org/rcsb/fatcat/server/util/package-use.html...
Building index for all the packages and classes...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/overview-tree.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/index-all.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/deprecated-list.html...
Building index for all classes...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/allclasses-frame.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/allclasses-noframe.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/index.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/overview-summary.html...
Generating /opt/cruise/projects/jfatcatserver/target/site/apidocs/help-doc.html...
13 warnings
[WARNING] Javadoc Warnings
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:373: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:352: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:389: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:373: warning - @param argument "conn" is not a parameter name.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:373: warning - @return tag cannot be used in method with void return type.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:389: warning - @param argument "conn" is not a parameter name.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/AlignmentPairDispatcher.java:389: warning - @return tag cannot be used in method with void return type.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:373: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:248: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:313: warning - @return tag has no arguments.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:373: warning - @param argument "method" is not a parameter name.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:373: warning - @param argument "name1" is not a parameter name.
[WARNING] /opt/cruise/projects/jfatcatserver/src/main/java/org/rcsb/fatcat/server/StructureAlignmentCalculator.java:373: warning - @param argument "name2" is not a parameter name.
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1 minute 27 seconds
[INFO] Finished at: Fri May 11 17:28:07 PDT 2012
[INFO] Final Memory: 71M/1379M
[INFO] ------------------------------------------------------------------------

 Unit Tests: (0)
No Tests Run
This project doesn't have any tests