| ||||||
| BUILD COMPLETE - build.43 | |
|---|---|
| Date of build: | 2011-11-08T17:31:02 |
| Time to build: | 1 minute(s) 7 second(s) |
| Last changed: | 2011-11-08T17:06:10 |
| Last log entry: | update name of protmod to modfinder |
| Build Artifacts |
| Modifications since last successful build: (1) | |||||
| modified | jgao | /RCSB_SequenceViewer/trunk/pom.xml | 9397 | 2011-11-08T17:06:10 | update name of protmod to modfinder |
| Initial Messages |
| [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Building protein-sequence-gui [INFO] task-segment: [install, source:jar, javadoc:jar, deploy] [INFO] ------------------------------------------------------------------------ |
| resources:resources {execution: default-resources} |
| [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] snapshot org.biojava:biojava:3.0.3-SNAPSHOT: checking for updates from maven2-repository.dev.java.net [INFO] snapshot org.biojava:biojava:3.0.3-SNAPSHOT: checking for updates from maven-repository.dev.java.net [INFO] snapshot org.biojava:biojava3-modfinder:3.0.3-SNAPSHOT: checking for updates from maven2-repository.dev.java.net [INFO] snapshot org.biojava:biojava3-modfinder:3.0.3-SNAPSHOT: checking for updates from maven-repository.dev.java.net [INFO] snapshot org.biojava:biojava3-structure-gui:3.0.3-SNAPSHOT: checking for updates from maven2-repository.dev.java.net [INFO] snapshot org.biojava:biojava3-structure-gui:3.0.3-SNAPSHOT: checking for updates from maven-repository.dev.java.net |
| compiler:compile {execution: default-compile} |
| [INFO] Compiling 1 source file to /opt/cruise/projects/biojava-seqview/target/classes |
| resources:testResources {execution: default-testResources} |
| [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource |
| compiler:testCompile {execution: default-testCompile} |
| [INFO] Nothing to compile - all classes are up to date |
| surefire:test {execution: default-test} |
| [INFO] Surefire report directory: /opt/cruise/projects/biojava-seqview/target/surefire-reports ------------------------------------------------------- T E S T S ------------------------------------------------------- There are no tests to run. Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 |
| jar:jar {execution: default-jar} |
| [INFO] Building jar: /opt/cruise/projects/biojava-seqview/target/sequenceui-2011.10-SNAPSHOT.jar |
| install:install {execution: default-install} |
| [INFO] Installing /opt/cruise/projects/biojava-seqview/target/sequenceui-2011.10-SNAPSHOT.jar to /home/andreas/.m2/repository/org/biojava/sequenceui/2011.10-SNAPSHOT/sequenceui-2011.10-SNAPSHOT.jar [INFO] Preparing source:jar [INFO] No goals needed for project - skipping |
| source:jar {execution: default-cli} |
| javadoc:jar {execution: default-cli} |
| [INFO] Loading source files for package org.rcsb.sequence.annotations... Loading source files for package org.rcsb.sequence.core... Loading source files for package org.rcsb.sequence.conf... Loading source files for package org.rcsb.sequence.model... Loading source files for package org.rcsb.sequence.biojavadao... Loading source files for package org.rcsb.sequence.util... Loading source files for package org.rcsb.sequence.view.html... Loading source files for package org.rcsb.sequence.view.oneline... Loading source files for package org.rcsb.sequence.view.multiline... Loading source files for package demo... Constructing Javadoc information... Standard Doclet version 1.7.0 Building tree for all the packages and classes... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/annotations/DisulphideValue.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/annotations/DomainDefinitionValue.html... 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Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/model/class-use/Chain.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/model/class-use/SequenceCollection.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/model/class-use/ResidueType.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/model/class-use/AnnotationValue.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/model/class-use/Annotation.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/model/class-use/PubMedFactory.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/model/class-use/AnnotationStatus.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/model/class-use/SegmentedSequence.html... 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Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/view/html/package-use.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/view/multiline/package-use.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/org/rcsb/sequence/view/oneline/package-use.html... Building index for all the packages and classes... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/overview-tree.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/index-all.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/deprecated-list.html... Building index for all classes... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/allclasses-frame.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/allclasses-noframe.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/index.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/overview-summary.html... Generating /opt/cruise/projects/biojava-seqview/target/apidocs/help-doc.html... 185 warnings [WARNING] Javadoc Warnings [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationValue.java:18: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationValue.java:24: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationValue.java:30: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationValue.java:36: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationValue.java:50: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/AbstractAnnotationGroup.java:185: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:122: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:83: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:74: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:135: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:115: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:128: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:147: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:141: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:34: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:100: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:67: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:54: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/AbstractAnnotationGroup.java:58: warning - @param argument "sequence" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:54: warning - Tag @link: reference not found: TestSecondaryStructureAnnotationWith1ATP#testDsspAgainstVSequenceString() [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:67: warning - Tag @link: reference not found: TestSecondaryStructureAnnotationWith1ATP#testDsspAgainstVSequenceString() [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:181: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:164: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:195: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:203: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:210: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:241: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:248: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:254: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:261: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/AbstractSequence.java:327: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/AbstractSequence.java:432: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/AbstractSequence.java:253: warning - @uml.property is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/AbstractSequence.java:253: warning - @param argument "element" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:338: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:30: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:17: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @Sequence is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:46: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:53: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @Sequence is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationInformation.java:23: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationInformation.java:29: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationInformation.java:17: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @Sequence is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @Sequence is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:365: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:344: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:350: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:45: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:152: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:159: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:70: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/ResidueIdImpl.java:269: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:76: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/ResidueIdImpl.java:291: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:88: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:82: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:51: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:57: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:100: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:107: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:64: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:93: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:184: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:191: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:275: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:199: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:269: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:113: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:213: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:206: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/ResidueIdImpl.java:133: warning - @uml.property is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:39: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SegmentedSequence.java:42: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SegmentedSequence.java:36: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SegmentedSequence.java:18: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SegmentedSequence.java:30: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceSegment.java:23: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceSegment.java:17: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceSegment.java:29: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceSegment.java:35: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @Sequence is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @Sequence is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @Sequence is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:22: warning - Tag @link: reference not found: ScopAnnotationGroup [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:54: warning - Tag @link: reference not found: TestSecondaryStructureAnnotationWith1ATP#testDsspAgainstVSequenceString() [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/AnnotationGroup.java:67: warning - Tag @link: reference not found: TestSecondaryStructureAnnotationWith1ATP#testDsspAgainstVSequenceString() [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Chain.java:15: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Reference.java:32: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:33: warning - Tag @link: reference not found: ResidueNumberSchemes [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:33: warning - Tag @link: reference not found: TestUniprotWith12E8 [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueId.java:191: warning - @param argument "aResideId" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueInfo.java:23: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueInfo.java:30: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:37: warning - Tag @see: missing final '>': "<a href="http://mmcif.rcsb.org/dictionaries/mmcif_pdbx.dic/Categories/pdbx_poly_seq_scheme.html">_pdbx_poly_seq_scheme</a> (in mmCIF dictionary)" [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:37: warning - Tag @see: missing final '>': "<a href="http://www.wwpdb.org/documentation/format23/sect3.html">SEQRES</a> (legacy PDB format primary structure)" [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:37: warning - Tag @see: missing final '>': "<a href="http://www.wwpdb.org/documentation/format23/sect9.html">ATOM</a> (legacy PDB format primary structure)" [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:92: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:101: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:140: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:149: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:130: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:120: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueNumberScheme.java:110: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueUtils.java:176: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueUtils.java:199: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueUtils.java:211: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueUtils.java:220: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueUtils.java:25: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueUtils.java:134: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueUtils.java:105: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/ResidueUtils.java:199: warning - @return tag cannot be used in method with void return type. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:164: warning - @param argument "clazz" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:181: warning - @param argument "clazz" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:235: warning - @param argument "id" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:306: warning - @param argument "start" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Sequence.java:306: warning - @param argument "end" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:88: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:62: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:74: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:82: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:43: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:50: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:100: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:106: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:121: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:19: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/SequenceCollection.java:25: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/util/MapOfCollections.java:295: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:251: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:313: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:299: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:378: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:240: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:279: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:289: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:529: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:342: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:269: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:537: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/SequenceCollectionView.java:537: warning - @return tag cannot be used in method with void return type. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:46: warning - Tag @link: reference not found: AbstractSequenceReportAction#getParams() [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:362: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:371: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:387: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:406: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:415: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:473: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:215: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:448: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:457: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:431: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:491: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:499: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:523: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:531: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:556: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:565: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:286: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:330: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:608: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:346: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:590: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:440: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:539: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:547: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:573: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:582: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:183: warning - @param argument "width" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:203: warning - @param argument "height" is not a parameter name. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:440: warning - @return tag cannot be used in method with void return type. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:539: warning - @return tag cannot be used in method with void return type. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:547: warning - @return tag cannot be used in method with void return type. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:573: warning - @return tag cannot be used in method with void return type. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/html/ViewParameters.java:582: warning - @return tag cannot be used in method with void return type. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/multiline/SequenceImage.java:440: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/multiline/SequenceImage.java:414: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/view/multiline/SequenceSummaryImage.java:128: warning - @return tag has no arguments. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/ResidueIdImpl.java:116: warning - @uml.property is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/ResidueIdImpl.java:116: warning - @uml.associationEnd is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/core/ResidueIdImpl.java:116: warning - @uml.association is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @Sequence is an unknown tag. [WARNING] /opt/cruise/projects/biojava-seqview/src/main/java/org/rcsb/sequence/model/Annotation.java:23: warning - @Sequence is an unknown tag. [INFO] Building jar: /opt/cruise/projects/biojava-seqview/target/sequenceui-2011.10-SNAPSHOT-javadoc.jar |
| resources:resources {execution: default-resources} |
| [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource |
| compiler:compile {execution: default-compile} |
| [INFO] Compiling 1 source file to /opt/cruise/projects/biojava-seqview/target/classes |
| resources:testResources {execution: default-testResources} |
| [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource |
| compiler:testCompile {execution: default-testCompile} |
| [INFO] Nothing to compile - all classes are up to date |
| surefire:test {execution: default-test} |
| [INFO] Surefire report directory: /opt/cruise/projects/biojava-seqview/target/surefire-reports ------------------------------------------------------- T E S T S ------------------------------------------------------- There are no tests to run. Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 |
| jar:jar {execution: default-jar} |
| install:install {execution: default-install} |
| [INFO] Installing /opt/cruise/projects/biojava-seqview/target/sequenceui-2011.10-SNAPSHOT.jar to /home/andreas/.m2/repository/org/biojava/sequenceui/2011.10-SNAPSHOT/sequenceui-2011.10-SNAPSHOT.jar [INFO] Installing /opt/cruise/projects/biojava-seqview/target/sequenceui-2011.10-SNAPSHOT-sources.jar to /home/andreas/.m2/repository/org/biojava/sequenceui/2011.10-SNAPSHOT/sequenceui-2011.10-SNAPSHOT-sources.jar [INFO] Installing /opt/cruise/projects/biojava-seqview/target/sequenceui-2011.10-SNAPSHOT-javadoc.jar to /home/andreas/.m2/repository/org/biojava/sequenceui/2011.10-SNAPSHOT/sequenceui-2011.10-SNAPSHOT-javadoc.jar |
| deploy:deploy {execution: default-deploy} |
| [INFO] Retrieving previous build number from biojava-maven-repo Uploading: scp://portal.open-bio.org/home/websites/biojava.org/html/static/download/maven//org/biojava/sequenceui/2011.10-SNAPSHOT/sequenceui-2011.10-SNAPSHOT.jar 266K uploaded (sequenceui-2011.10-SNAPSHOT.jar) [INFO] Retrieving previous metadata from biojava-maven-repo [INFO] Uploading repository metadata for: 'artifact org.biojava:sequenceui' [INFO] Retrieving previous metadata from biojava-maven-repo [INFO] Uploading repository metadata for: 'snapshot org.biojava:sequenceui:2011.10-SNAPSHOT' [INFO] Uploading project information for sequenceui 2011.10-SNAPSHOT [INFO] Retrieving previous build number from biojava-maven-repo Uploading: scp://portal.open-bio.org/home/websites/biojava.org/html/static/download/maven//org/biojava/sequenceui/2011.10-SNAPSHOT/sequenceui-2011.10-SNAPSHOT-sources.jar 162K uploaded (sequenceui-2011.10-SNAPSHOT-sources.jar) [INFO] Retrieving previous build number from biojava-maven-repo Uploading: scp://portal.open-bio.org/home/websites/biojava.org/html/static/download/maven//org/biojava/sequenceui/2011.10-SNAPSHOT/sequenceui-2011.10-SNAPSHOT-javadoc.jar 773K uploaded (sequenceui-2011.10-SNAPSHOT-javadoc.jar) [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1 minute 7 seconds [INFO] Finished at: Tue Nov 08 09:32:11 PST 2011 [INFO] Final Memory: 61M/1374M [INFO] ------------------------------------------------------------------------ |
| Unit Tests: (0) | |||
| No Tests Run | |||
| This project doesn't have any tests | |||
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